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Genomic Knowledge Model Starter Kit

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ga4gh/gkm-starter-kit

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About the GKM

Genomic Knowledge Model Starter Kit

ga4gh/gkm-starter-kit

Home
Data
Data
- Native
- Bundle
  Bundle
- Bulk
Tools
Tools
- Reference implementations
- GKM Toolkit
  GKM Toolkit
  - Installation
  - Quick start
  - Explore with notebooks
    
    Explore with notebooks
    
    Explore GKM Toolkit features with CIViC bundle examples
    
    Explore the public bundle repository
    
    Validate a bundle
  - API reference
    
    API reference
    
    Containers
    
    Loading
    
    Pointers
    
    Schema validation
    
    Schema resolution
    
    Model conversion
    
    Compatibility
    
    Registry
    
    Bundle repository
    
    Errors
  - Development and contributing
User Stories
User Stories
- Browse by product
  Browse by product
  - GKM-Core
  - VRS
  - Cat-VRS
  - VA-Spec
- Browse by use pattern
  Browse by use pattern
  - Cross-source variant harmonization
  - Knowledgebase exchange
- Browse by implementer
  Browse by implementer
  - BRCA Exchange
    
    BRCA Exchange
    
    Identifying unique variants across sources with VRS
  - CIViC
    
    CIViC
    
    Sharing oncogenicity knowledge with GA4GH GKM
    
    Sharing oncogenicity knowledge with GA4GH GKM
    
    Try the Notebook
  - ClinGen
    
    ClinGen
    
    Harmonizing ClinVar by VRS identity
  - Individual-Centric Genomics Platform JPN
    
    Individual-Centric Genomics Platform JPN
    
    Making personal genomic knowledge auditable so AI can be trusted, not just believed
- Contribute to User Stories
About the GKM

Browse by implementer

Choose a category to browse the matching user stories.

BRCA Exchange
CIViC
ClinGen
Individual-Centric Genomics Platform JPN

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