Public bundle repository
The public bundle repository provides access to complete, published GKM bundles and their schemas. Each bundle contains the dataset its producer releases for that version. For small, focused subsets of a producer's actual data, see the bundle examples.
Downloads
Download the files below, or access the repository programmatically through the Python API. The table is generated during the documentation build using BundleRepository.
| Resource | Bundle Schema Description | Bundle | Schema |
|---|---|---|---|
civic |
CIViC organizes curated cancer variant knowledge around variants and molecular profiles with evidence from source publications, summary assertions, and clinical context such as diseases, therapies, phenotypes, variant origins, and curating organizations. This schema describes a GA4GH GKM representation of those CIViC concepts. Top-level keys use CIViC knowledge model terms where possible, with additional keys for supporting GKM representation details. For the CIViC data model, see https://civic.readthedocs.io/en/latest/model.html. | Download (745.47 KB) | Download (17.91 KB) |
Dataset contributions
Support for contributing additional datasets to the public repository is planned. Contribution guidance will be published when the hosting and review process is ready.