Insert size standard deviation

• ID: insert_size_std_deviation
• Description: The insert size standard deviation of short paired-end sequencing high quality reads, primary alignments, mapped on GRCh38 assembly. Duplicated reads and clipped bases are included. No minimum mapping quality is imposed.
• Implementation details: In the NPM-sample-QC reference implementation it is computed using samtools stats, reporting the insert_size_standard_deviation field. Duplicated reads are included. No mapping qualiy is applied.
• Type: Float 1 decimal precision (eg. 99.4)
• Functionally equivalent implementations:
  • NPM sample qc
  • ICGC-ARGO dnaalnqc