Count: Insertions
- ID: count_insertions
- Description: The number of variant of type indels categorized as short insertions (less than 50bp) in VCF, only in autosomal regions, high quality variants.
- Implementation details: In the NPM-sample-QC reference implementation, calculate the number of variant of type indels categorized as insertions in VCF, only in autosomal regions, high quality variants by bcftools view, (
bcftools view -H -v indels -f PASS....INS
). - Type: Integer (eg. 490511)
- Functionally equivalent implementations: