GA4GH Pedigree FHIR Implementation Guide
0.1.0 - ci-build
GA4GH Pedigree FHIR Implementation Guide - Local Development build (v0.1.0). See the Directory of published versions
| Draft as of 2022-04-22 |
{
"resourceType" : "CodeSystem",
"id" : "kin",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Properties</b></p><table class=\"grid\"><tr><td><b>Code</b></td><td><b>Type</b></td><td><b>Description</b></td></tr><tr><td>parent</td><td>code</td><td>Parent codes.</td></tr><tr><td>imported</td><td>boolean</td><td>Indicates if the concept is imported from another code system.</td></tr><tr><td>root</td><td>boolean</td><td>Indicates if this concept is a root concept (i.e. Thing is equivalent or a direct parent)</td></tr><tr><td>deprecated</td><td>boolean</td><td>Indicates if this concept is deprecated.</td></tr></table><p><b>Filters</b></p><table class=\"grid\"><tr><td><b>Code</b></td><td><b>Description</b></td><td><b>operator</b></td><td><b>Value</b></td></tr><tr><td>root</td><td/><td>= </td><td>True or false.</td></tr><tr><td>deprecated</td><td/><td>= </td><td>True or false.</td></tr><tr><td>imported</td><td/><td>= </td><td>True or false</td></tr></table><p>This code system http://purl.org/ga4gh/kin.fhir defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>parent</b></td><td><b>imported</b></td><td><b>root</b></td><td><b>deprecated</b></td></tr><tr><td style=\"white-space:nowrap\">KIN:994<a name=\"kin-KIN.58994\"> </a></td><td>Man</td><td>KIN:998</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:993<a name=\"kin-KIN.58993\"> </a></td><td>Woman</td><td>KIN:998</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:996<a name=\"kin-KIN.58996\"> </a></td><td>Male</td><td>KIN:997</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:995<a name=\"kin-KIN.58995\"> </a></td><td>Female</td><td>KIN:997</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:998<a name=\"kin-KIN.58998\"> </a></td><td>Person</td><td>Thing</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:997<a name=\"kin-KIN.58997\"> </a></td><td>Sex</td><td>KIN:999</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:999<a name=\"kin-KIN.58999\"> </a></td><td>Domain Entity</td><td>Thing</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">Thing<a name=\"kin-Thing\"> </a></td><td>Thing</td><td/><td>false</td><td>true</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:001<a name=\"kin-KIN.58001\"> </a></td><td>isRelative</td><td>topObjectProperty</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:002<a name=\"kin-KIN.58002\"> </a></td><td>isBiologicalRelative</td><td>KIN:001</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:003<a name=\"kin-KIN.58003\"> </a></td><td>isBiologicalParent</td><td>KIN:002</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:004<a name=\"kin-KIN.58004\"> </a></td><td>isSpermDonor</td><td>KIN:033, KIN:003</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:005<a name=\"kin-KIN.58005\"> </a></td><td>isGestationalCarrier</td><td>KIN:001</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:006<a name=\"kin-KIN.58006\"> </a></td><td>isSurrogateOvumDonor</td><td>KIN:038, KIN:005</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:007<a name=\"kin-KIN.58007\"> </a></td><td>isBiologicalSibling</td><td>KIN:002</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:008<a name=\"kin-KIN.58008\"> </a></td><td>isFullsibling</td><td>KIN:007</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:009<a name=\"kin-KIN.58009\"> </a></td><td>isTwin</td><td>KIN:008</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:010<a name=\"kin-KIN.58010\"> </a></td><td>isMonozygoticTwin</td><td>KIN:009</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:011<a name=\"kin-KIN.58011\"> </a></td><td>isPolyzygoticTwin</td><td>KIN:010</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:012<a name=\"kin-KIN.58012\"> </a></td><td>isHalfSibling</td><td>KIN:007</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:013<a name=\"kin-KIN.58013\"> </a></td><td>isParentalSibling</td><td>KIN:002</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:014<a name=\"kin-KIN.58014\"> </a></td><td>isCousin</td><td>KIN:002</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:015<a name=\"kin-KIN.58015\"> </a></td><td>isMaternalCousin</td><td>KIN:014</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:016<a name=\"kin-KIN.58016\"> </a></td><td>isPaternalCousin</td><td>KIN:014</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:017<a name=\"kin-KIN.58017\"> </a></td><td>isGrandparent</td><td>KIN:002</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:018<a name=\"kin-KIN.58018\"> </a></td><td>isGreatGrandparent</td><td>KIN:002</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:019<a name=\"kin-KIN.58019\"> </a></td><td>isSocialLegalRelative</td><td>KIN:001</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:020<a name=\"kin-KIN.58020\"> </a></td><td>isParentFigure</td><td>KIN:019</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:021<a name=\"kin-KIN.58021\"> </a></td><td>isFosterParent</td><td>KIN:020</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:022<a name=\"kin-KIN.58022\"> </a></td><td>isAdoptiveParent</td><td>KIN:020</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:023<a name=\"kin-KIN.58023\"> </a></td><td>isStepParent</td><td>KIN:020</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:024<a name=\"kin-KIN.58024\"> </a></td><td>isSiblingFigure</td><td>KIN:019</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:025<a name=\"kin-KIN.58025\"> </a></td><td>isStepSibling</td><td>KIN:024</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:026<a name=\"kin-KIN.58026\"> </a></td><td>isPartner</td><td>KIN:019</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:027<a name=\"kin-KIN.58027\"> </a></td><td>isBiologicalMother</td><td>KIN:033, KIN:003</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:028<a name=\"kin-KIN.58028\"> </a></td><td>isBiologicalFather</td><td>KIN:033, KIN:003</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:029<a name=\"kin-KIN.58029\"> </a></td><td>isMitochondrialDonor</td><td>KIN:001</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:030<a name=\"kin-KIN.58030\"> </a></td><td>isConsanguineousPartner</td><td>KIN:002, KIN:026</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:031<a name=\"kin-KIN.58031\"> </a></td><td>hasSex</td><td>topObjectProperty</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:032<a name=\"kin-KIN.58032\"> </a></td><td>isBiologicalChild</td><td>KIN:002</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:033<a name=\"kin-KIN.58033\"> </a></td><td>hasBiologicalChild</td><td>KIN:002</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:034<a name=\"kin-KIN.58034\"> </a></td><td>hasBiologicalParent</td><td>KIN:002</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:035<a name=\"kin-KIN.58035\"> </a></td><td>hasGrandparent</td><td>KIN:002</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:036<a name=\"kin-KIN.58036\"> </a></td><td>isGrandchild</td><td>KIN:002</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:037<a name=\"kin-KIN.58037\"> </a></td><td>hasGrandchild</td><td>KIN:002</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:038<a name=\"kin-KIN.58038\"> </a></td><td>isOvumDonor</td><td>KIN:033, KIN:003</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:039<a name=\"kin-KIN.58039\"> </a></td><td>hasGestationalCarrier</td><td>KIN:001</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:040<a name=\"kin-KIN.58040\"> </a></td><td>hasBiologicalFather</td><td>KIN:034, KIN:032</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:041<a name=\"kin-KIN.58041\"> </a></td><td>hasBiologicalMother</td><td>KIN:034, KIN:032</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:042<a name=\"kin-KIN.58042\"> </a></td><td>hasOvumDonor</td><td>KIN:034, KIN:032</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:043<a name=\"kin-KIN.58043\"> </a></td><td>hasSurrogateOvumDonor</td><td>KIN:042, KIN:039</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:044<a name=\"kin-KIN.58044\"> </a></td><td>hasSpermDonor</td><td>KIN:034, KIN:032</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:045<a name=\"kin-KIN.58045\"> </a></td><td>hasGreatGrandParent</td><td>KIN:002</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">KIN:046<a name=\"kin-KIN.58046\"> </a></td><td>hasParentalSibling</td><td>KIN:002</td><td>false</td><td>false</td><td>false</td></tr><tr><td style=\"white-space:nowrap\">topObjectProperty<a name=\"kin-topObjectProperty\"> </a></td><td>topObjectProperty</td><td/><td>false</td><td>true</td><td>false</td></tr></table></div>"
},
"url" : "http://purl.org/ga4gh/kin.fhir",
"version" : "0.1.0",
"name" : "FamilyHistoryRelationsOntology",
"title" : "Family History Relations Ontology",
"status" : "draft",
"experimental" : false,
"date" : "2022-04-22T03:08:28+00:00",
"publisher" : "Global Alliance for Genomics and Health - Clinical and Phenotypic Data Capture Work Stream",
"contact" : [
{
"name" : "Global Alliance for Genomics and Health - Clinical and Phenotypic Data Capture Work Stream",
"telecom" : [
{
"system" : "url",
"value" : "https://www.ga4gh.org/work_stream/clinical-phenotypic-data-capture-2/"
}
]
}
],
"description" : "A family relationships ontology.",
"copyright" : "[Global Alliance for Genomics and Health](https://www.ga4gh.org)",
"valueSet" : "http://purl.org/ga4gh/kin.fhir?vs",
"hierarchyMeaning" : "is-a",
"compositional" : false,
"versionNeeded" : false,
"content" : "complete",
"count" : 55,
"filter" : [
{
"code" : "root",
"operator" : [
"="
],
"value" : "True or false."
},
{
"code" : "deprecated",
"operator" : [
"="
],
"value" : "True or false."
},
{
"code" : "imported",
"operator" : [
"="
],
"value" : "True or false"
}
],
"property" : [
{
"code" : "parent",
"description" : "Parent codes.",
"type" : "code"
},
{
"code" : "imported",
"description" : "Indicates if the concept is imported from another code system.",
"type" : "boolean"
},
{
"code" : "root",
"description" : "Indicates if this concept is a root concept (i.e. Thing is equivalent or a direct parent)",
"type" : "boolean"
},
{
"code" : "deprecated",
"description" : "Indicates if this concept is deprecated.",
"type" : "boolean"
}
],
"concept" : [
{
"code" : "KIN:994",
"display" : "Man",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:998"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:993",
"display" : "Woman",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:998"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:996",
"display" : "Male",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:997"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:995",
"display" : "Female",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:997"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:998",
"display" : "Person",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "Thing"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:997",
"display" : "Sex",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:999"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:999",
"display" : "Domain Entity",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "Thing"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "Thing",
"display" : "Thing",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "root",
"valueBoolean" : true
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:001",
"display" : "isRelative",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "topObjectProperty"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:002",
"display" : "isBiologicalRelative",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:001"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:003",
"display" : "isBiologicalParent",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:002"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:004",
"display" : "isSpermDonor",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:033"
},
{
"code" : "parent",
"valueCode" : "KIN:003"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:005",
"display" : "isGestationalCarrier",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:001"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:006",
"display" : "isSurrogateOvumDonor",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:038"
},
{
"code" : "parent",
"valueCode" : "KIN:005"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:007",
"display" : "isBiologicalSibling",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:002"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:008",
"display" : "isFullsibling",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:007"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:009",
"display" : "isTwin",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:008"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:010",
"display" : "isMonozygoticTwin",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:009"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:011",
"display" : "isPolyzygoticTwin",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:010"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:012",
"display" : "isHalfSibling",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:007"
},
{
"code" : "root",
"valueBoolean" : false
},
{
"code" : "deprecated",
"valueBoolean" : false
}
]
},
{
"code" : "KIN:013",
"display" : "isParentalSibling",
"property" : [
{
"code" : "imported",
"valueBoolean" : false
},
{
"code" : "parent",
"valueCode" : "KIN:002"
},
{
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}